No. words: 1725; after pruning: 1686


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:825)  493  0.00 0.00 0.00  UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1       49   545 (0)  C UCD021F_B11_BF201830Sn24P025C08P012B111F2_093.ab1   (0)   778   282 *
Merge:(0)    0    0.0 8.8 (2,1:8)  397  0.25 0.00 0.00  UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1        9   410 (135)    UCD021R_B11_BF201830Sn24P025C08P012B111R2_093.ab1        1   402 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  618 nodes

 146 str. conn. components

Path
    1    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1     1 
   40    UCD021R_B11_BF201830Sn24P025C08P012B111R2_093.ab1    32 
   52    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1    52 
   80    UCD021R_B11_BF201830Sn24P025C08P012B111R2_093.ab1    72 
  100    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   100 
  104    UCD021R_B11_BF201830Sn24P025C08P012B111R2_093.ab1    96 
  108    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   108 
  124    UCD021R_B11_BF201830Sn24P025C08P012B111R2_093.ab1   116 
  140    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   140 
  144    UCD021R_B11_BF201830Sn24P025C08P012B111R2_093.ab1   136 
  148    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   148 
  160    UCD021R_B11_BF201830Sn24P025C08P012B111R2_093.ab1   152 
  164    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   164 
  260    UCD021R_B11_BF201830Sn24P025C08P012B111R2_093.ab1   252 
  264    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   264 
  352  C UCD021F_B11_BF201830Sn24P025C08P012B111F2_093.ab1   475 
  356    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   356 
  360  C UCD021F_B11_BF201830Sn24P025C08P012B111F2_093.ab1   467 
  364    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   364 
  372  C UCD021F_B11_BF201830Sn24P025C08P012B111F2_093.ab1   455 
  376    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   376 
  392  C UCD021F_B11_BF201830Sn24P025C08P012B111F2_093.ab1   435 
  396    UCD012R_B05_BF201830Sn24P025C08P012B111R1_045.ab1   396 
  440  C UCD021F_B11_BF201830Sn24P025C08P012B111F2_093.ab1   387 
Contig length: old 826, new 826

Contig length: old 826, new 826
New start: 0