No. words: 1419; after pruning: 1393


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.8 (1,1:725)  603  3.92 0.00 0.00  UCD027F_F11_BF201830Sn24P025H07P036D021F1_085.ab1        1   688 (0)  C UCD027R_F11_BF201830Sn24P025H07P036D021R1_085.ab1   (5)   726    39 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C UCD027R_F11_BF201830Sn24P025H07P036D021R1_085.ab1   731 
   13    UCD027F_F11_BF201830Sn24P025H07P036D021F1_085.ab1     8 
   34  C UCD027R_F11_BF201830Sn24P025H07P036D021R1_085.ab1   698 
   38    UCD027F_F11_BF201830Sn24P025H07P036D021F1_085.ab1    33 
   46  C UCD027R_F11_BF201830Sn24P025H07P036D021R1_085.ab1   686 
  103    UCD027F_F11_BF201830Sn24P025H07P036D021F1_085.ab1    98 
  111  C UCD027R_F11_BF201830Sn24P025H07P036D021R1_085.ab1   621 
Contig length: old 731, new 731

Contig length: old 731, new 731
New start: 0