No. words: 1530; after pruning: 1491


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:846)  391  0.74 0.00 0.00  UCD021F_C11_BF201830Sn25P025C08P012B111F2_091.ab1      306   709 (0)  C UCD021R_C11_BF201830Sn25P025C08P012B111R2_091.ab1   (0)   542   139 *
Merge:(0)    0    0.0 5.5 (2,1:848)  260  1.81 0.00 0.00  UCD021R_C11_BF201830Sn25P025C08P012B111R2_091.ab1        1   277 (265)    UCD012R_C05_BF201830Sn25P025C08P012B111R1_043.ab1        3   279 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  378 nodes

 172 str. conn. components

Path
    1    UCD021R_C11_BF201830Sn25P025C08P012B111R2_091.ab1     1 
   15    UCD012R_C05_BF201830Sn25P025C08P012B111R1_043.ab1    17 
   31    UCD021R_C11_BF201830Sn25P025C08P012B111R2_091.ab1    31 
   51    UCD012R_C05_BF201830Sn25P025C08P012B111R1_043.ab1    53 
   55    UCD021R_C11_BF201830Sn25P025C08P012B111R2_091.ab1    55 
   67    UCD012R_C05_BF201830Sn25P025C08P012B111R1_043.ab1    69 
   79    UCD021R_C11_BF201830Sn25P025C08P012B111R2_091.ab1    79 
  417  C UCD021F_C11_BF201830Sn25P025C08P012B111F2_091.ab1   431 
  421    UCD021R_C11_BF201830Sn25P025C08P012B111R2_091.ab1   421 
  449  C UCD021F_C11_BF201830Sn25P025C08P012B111F2_091.ab1   399 
Contig length: old 849, new 847

Contig length: old 847, new 847
New start: 0