No. words: 1043; after pruning: 1017


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.1 (1,1:662)  328  4.47 0.00 0.00  UCD027F_G11_BF201830Sn25P025H07P036D021F1_083.ab1      140   519 (0)  C UCD027R_G11_BF201830Sn25P025H07P036D021R1_083.ab1   (0)   524   145 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  144 nodes

 74 str. conn. components

Path
    1    UCD027F_G11_BF201830Sn25P025H07P036D021F1_083.ab1     1 
  189  C UCD027R_G11_BF201830Sn25P025H07P036D021R1_083.ab1   475 
  211    UCD027F_G11_BF201830Sn25P025H07P036D021F1_083.ab1   211 
  222  C UCD027R_G11_BF201830Sn25P025H07P036D021R1_083.ab1   442 
  226    UCD027F_G11_BF201830Sn25P025H07P036D021F1_083.ab1   226 
  230  C UCD027R_G11_BF201830Sn25P025H07P036D021R1_083.ab1   434 
  258    UCD027F_G11_BF201830Sn25P025H07P036D021F1_083.ab1   258 
  267  C UCD027R_G11_BF201830Sn25P025H07P036D021R1_083.ab1   397 
Contig length: old 663, new 663

Contig length: old 663, new 663
New start: 0 
S Change at: 147; seg lengths: entry 1, contig 1
S Change at: 173; seg lengths: entry 1, contig 1