No. words: 1975; after pruning: 1923


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:842)  540  0.18 0.00 0.00  UCD021F_D11_BF201830Sn26P025C08P012B111F2_089.ab1      250   796 (0)  C UCD021R_D11_BF201830Sn26P025C08P012B111R2_089.ab1   (0)   594    48 *
Merge:(0)    0    0.0 9.2 (2,1:844)  437  0.89 0.00 0.00  UCD021R_D11_BF201830Sn26P025C08P012B111R2_089.ab1        1   451 (143)    UCD012R_D05_BF201830Sn26P025C08P012B111R1_041.ab1        3   453 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    
Merge:(0)    0    0.0 2.6 (3,1:17)  124  0.76 0.76 0.00  UCD021F_D11_BF201830Sn26P025C08P012B111F2_089.ab1       19   149 (647)    UCD012F_D05_BF201830Sn26P025C08P012B111F1_041.ab1        1   132 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  730 nodes

 350 str. conn. components

Path
    1    UCD021F_D11_BF201830Sn26P025C08P012B111F2_089.ab1     1 
  261  C UCD021R_D11_BF201830Sn26P025C08P012B111R2_089.ab1   583 
  265    UCD021F_D11_BF201830Sn26P025C08P012B111F2_089.ab1   265 
  297  C UCD021R_D11_BF201830Sn26P025C08P012B111R2_089.ab1   547 
  301    UCD021F_D11_BF201830Sn26P025C08P012B111F2_089.ab1   301 
  365  C UCD021R_D11_BF201830Sn26P025C08P012B111R2_089.ab1   479 
  369    UCD021F_D11_BF201830Sn26P025C08P012B111F2_089.ab1   369 
  377  C UCD021R_D11_BF201830Sn26P025C08P012B111R2_089.ab1   467 
  748  C UCD012R_D05_BF201830Sn26P025C08P012B111R1_041.ab1    98 
  752  C UCD021R_D11_BF201830Sn26P025C08P012B111R2_089.ab1    92 
  768  C UCD012R_D05_BF201830Sn26P025C08P012B111R1_041.ab1    78 
  792  C UCD021R_D11_BF201830Sn26P025C08P012B111R2_089.ab1    52 
  828  C UCD012R_D05_BF201830Sn26P025C08P012B111R1_041.ab1    18 
Contig length: old 845, new 845

Contig length: old 845, new 845
New start: 0