No. words: 1692; after pruning: 1653


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:0)  331  3.25 0.00 0.00  UCD012R_E05_BF201830Sn27P025C08P012B111R1_039.ab1        1   369 (0)    UCD021R_E11_BF201830Sn27P025C08P012B111R2_087.ab1        1   369 (93) *

Pass: 1
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (2,1:847)  451  0.00 0.00 0.22  UCD021R_E11_BF201830Sn27P025C08P012B111R2_087.ab1        4   462 (0)  C UCD021F_E11_BF201830Sn27P025C08P012B111F2_087.ab1   (17)   844   387 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  540 nodes

 195 str. conn. components

Path
    1  C UCD021F_E11_BF201830Sn27P025C08P012B111F2_087.ab1   861 
   22    UCD021R_E11_BF201830Sn27P025C08P012B111R2_087.ab1     8 
   29    UCD012R_E05_BF201830Sn27P025C08P012B111R1_039.ab1    15 
   53    UCD021R_E11_BF201830Sn27P025C08P012B111R2_087.ab1    39 
   65    UCD012R_E05_BF201830Sn27P025C08P012B111R1_039.ab1    51 
   93    UCD021R_E11_BF201830Sn27P025C08P012B111R2_087.ab1    79 
  326  C UCD021F_E11_BF201830Sn27P025C08P012B111F2_087.ab1   536 
  327    UCD021R_E11_BF201830Sn27P025C08P012B111R2_087.ab1   313 
  362  C UCD021F_E11_BF201830Sn27P025C08P012B111F2_087.ab1   500 
  366    UCD021R_E11_BF201830Sn27P025C08P012B111R2_087.ab1   352 
  374  C UCD021F_E11_BF201830Sn27P025C08P012B111F2_087.ab1   488 
  394    UCD021R_E11_BF201830Sn27P025C08P012B111R2_087.ab1   380 
  398  C UCD021F_E11_BF201830Sn27P025C08P012B111F2_087.ab1   464 
  418    UCD021R_E11_BF201830Sn27P025C08P012B111R2_087.ab1   404 
  426  C UCD021F_E11_BF201830Sn27P025C08P012B111F2_087.ab1   436 
Contig length: old 861, new 861

Contig length: old 861, new 861
New start: 0