No. words: 3035; after pruning: 2983


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.0 (1,1:837)  808  0.00 0.00 0.00  UCD012F_G05_BF201830Sn29P025C08P012B111F1_035.ab1        1   811 (0)  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   (46)   838    28 *
Merge:(0)    0    0.0 13.1 (2,1:844)  592  0.17 0.00 0.00  UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1        1   597 (287)    UCD021R_G11_BF201830Sn29P025C08P012B111R2_083.ab1        8   604 (0) *
Merge:(0)    0    0.0 12.5 (3,1:5)  701  1.08 0.00 0.27  UCD012F_G05_BF201830Sn29P025C08P012B111F1_035.ab1        5   742 (69)    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1        1   736 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       5 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1892 nodes

 527 str. conn. components

Path
    1  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   884 
   50    UCD012F_G05_BF201830Sn29P025C08P012B111F1_035.ab1     4 
   82    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1    30 
   90    UCD012F_G05_BF201830Sn29P025C08P012B111F1_035.ab1    44 
   98    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1    46 
  100  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   785 
  102    UCD012F_G05_BF201830Sn29P025C08P012B111F1_035.ab1    56 
  110  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   775 
  112    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1    60 
  114    UCD012F_G05_BF201830Sn29P025C08P012B111F1_035.ab1    68 
  118  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   767 
  130    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1    78 
  136  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   749 
  144    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1    92 
  156  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   729 
  160    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1   108 
  166  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   719 
  170    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1   118 
  174  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   711 
  198    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1   146 
  200  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   685 
  218    UCD012F_G05_BF201830Sn29P025C08P012B111F1_035.ab1   172 
  222  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   663 
  258    UCD021F_G11_BF201830Sn29P025C08P012B111F2_083.ab1   206 
  262  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   623 
  278    UCD012F_G05_BF201830Sn29P025C08P012B111F1_035.ab1   232 
  282  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   603 
  593  C UCD021R_G11_BF201830Sn29P025C08P012B111R2_083.ab1   299 
  597  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1   288 
  813  C UCD021R_G11_BF201830Sn29P025C08P012B111R2_083.ab1    79 
  817  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1    68 
  845  C UCD021R_G11_BF201830Sn29P025C08P012B111R2_083.ab1    47 
  853  C UCD012R_G05_BF201830Sn29P025C08P012B111R1_035.ab1    32 
  857  C UCD021R_G11_BF201830Sn29P025C08P012B111R2_083.ab1    35 
Contig length: old 891, new 891

Contig length: old 891, new 891
New start: 0