No. words: 1445; after pruning: 1406


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:-5)  306  0.94 0.00 0.00  UCD012R_B06_BF201830Sn32P025C08P012B111R1_046.ab1        1   318 (0)    UCD021R_B12_BF201830Sn32P025C08P012B111R2_094.ab1        6   323 (81) *
Merge:(0)    0    0.0 6.2 (2,1:799)  311  0.93 0.00 0.00  UCD021R_B12_BF201830Sn32P025C08P012B111R2_094.ab1       83   404 (0)  C UCD021F_B12_BF201830Sn32P025C08P012B111F2_094.ab1   (0)   723   402 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  412 nodes

 206 str. conn. components

Path
    1    UCD021R_B12_BF201830Sn32P025C08P012B111R2_094.ab1     1 
   29    UCD012R_B06_BF201830Sn32P025C08P012B111R1_046.ab1    24 
   65    UCD021R_B12_BF201830Sn32P025C08P012B111R2_094.ab1    65 
  185    UCD012R_B06_BF201830Sn32P025C08P012B111R1_046.ab1   180 
  201    UCD021R_B12_BF201830Sn32P025C08P012B111R2_094.ab1   201 
  333  C UCD021F_B12_BF201830Sn32P025C08P012B111F2_094.ab1   473 
  337    UCD021R_B12_BF201830Sn32P025C08P012B111R2_094.ab1   337 
  341  C UCD021F_B12_BF201830Sn32P025C08P012B111F2_094.ab1   465 
  345    UCD021R_B12_BF201830Sn32P025C08P012B111R2_094.ab1   345 
  353  C UCD021F_B12_BF201830Sn32P025C08P012B111F2_094.ab1   453 
  361    UCD021R_B12_BF201830Sn32P025C08P012B111R2_094.ab1   361 
  365  C UCD021F_B12_BF201830Sn32P025C08P012B111F2_094.ab1   441 
Contig length: old 805, new 805

Contig length: old 805, new 805
New start: 0