No. words: 1418; after pruning: 1392


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.4 (1,1:926)  481  0.41 0.00 0.00  UCD004F_G06_BF201830TU02P012B05B111F1_036.ab1      264   752 (0)  C UCD004R_G06_BF201830TU02P012B05B111R1_036.ab1   (2)   664   176 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1    UCD004F_G06_BF201830TU02P012B05B111F1_036.ab1     1 
  501  C UCD004R_G06_BF201830TU02P012B05B111R1_036.ab1   427 
  509    UCD004F_G06_BF201830TU02P012B05B111F1_036.ab1   509 
  529  C UCD004R_G06_BF201830TU02P012B05B111R1_036.ab1   399 
  533    UCD004F_G06_BF201830TU02P012B05B111F1_036.ab1   533 
  549  C UCD004R_G06_BF201830TU02P012B05B111R1_036.ab1   379 
  569    UCD004F_G06_BF201830TU02P012B05B111F1_036.ab1   569 
  573  C UCD004R_G06_BF201830TU02P012B05B111R1_036.ab1   355 
Contig length: old 927, new 927

Contig length: old 927, new 927
New start: 0