No. words: 1940; after pruning: 1901


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:841)  548  0.00 0.00 0.00  UCD021F_E09_BF201830Ta11P025C08P012B111F2_071.ab1      235   786 (0)  C UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   (0)   608    57 *
Merge:(0)    1    0.0 10.6 (2,1:842)  536  0.00 0.18 0.00  UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1        1   544 (64)    UCD012R_E03_BF201830Ta11P025C08P012B111R1_023.ab1        1   545 (1) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  786 nodes

 275 str. conn. components

Path
    1    UCD012R_E03_BF201830Ta11P025C08P012B111R1_023.ab1     1 
   27    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1    26 
   31    UCD012R_E03_BF201830Ta11P025C08P012B111R1_023.ab1    31 
  101    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   100 
  163    UCD012R_E03_BF201830Ta11P025C08P012B111R1_023.ab1   163 
  167    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   166 
  173    UCD012R_E03_BF201830Ta11P025C08P012B111R1_023.ab1   173 
  181    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   180 
  193    UCD012R_E03_BF201830Ta11P025C08P012B111R1_023.ab1   193 
  237    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   236 
  415    UCD012R_E03_BF201830Ta11P025C08P012B111R1_023.ab1   415 
  421    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   420 
  449  C UCD021F_E09_BF201830Ta11P025C08P012B111F2_071.ab1   395 
  477    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   476 
  481  C UCD021F_E09_BF201830Ta11P025C08P012B111F2_071.ab1   363 
  505    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   504 
  509  C UCD021F_E09_BF201830Ta11P025C08P012B111F2_071.ab1   335 
  517    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   516 
  521  C UCD021F_E09_BF201830Ta11P025C08P012B111F2_071.ab1   323 
  533    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   532 
  537  C UCD021F_E09_BF201830Ta11P025C08P012B111F2_071.ab1   307 
  553    UCD021R_E09_BF201830Ta11P025C08P012B111R2_071.ab1   552 
  561  C UCD021F_E09_BF201830Ta11P025C08P012B111F2_071.ab1   283 
Contig length: old 843, new 843

Contig length: old 843, new 843
New start: 0