No. words: 2398; after pruning: 2346


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    5    0.0 11.9 (1,1:2)  603  0.00 0.00 0.00  UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1        7   612 (7)    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1        5   610 (5) *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.0 (2,1:846)  608  0.00 0.16 0.00  UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1        1   615 (0)  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   (11)   846   231 *
Merge:(0)    0   -0.4 5.3 (3,1:852)  284  0.33 1.00 0.00  UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1        1   300 (557)    UCD012F_F03_BF201830Ta12P025C08P012B111F1_021.ab1        5   307 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0
-0.4       1        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       3 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1092 nodes

 376 str. conn. components

Path
    1    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1     1 
   30    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1    28 
   38    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1    38 
   78    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1    76 
   86    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1    86 
   94    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1    92 
   98    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1    98 
  106    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   104 
  114    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   114 
  122    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   120 
  126    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   126 
  142    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   140 
  158    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   158 
  186    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   184 
  194    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   194 
  238    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   236 
  274    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   274 
  278    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   276 
  322    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   322 
  326    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   324 
  342    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   342 
  354    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   352 
  414    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   414 
  430    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   428 
  450  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   398 
  454    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   452 
  466    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   466 
  470  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   378 
  481    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   481 
  482  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   366 
  497    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   497 
  498  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   350 
  509    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   509 
  510  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   338 
  518    UCD012R_F03_BF201830Ta12P025C08P012B111R1_021.ab1   518 
  521  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   327 
  546    UCD021R_F09_BF201830Ta12P025C08P012B111R2_069.ab1   544 
  550  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   298 
  657  C UCD012F_F03_BF201830Ta12P025C08P012B111F1_021.ab1   198 
  669  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   179 
  725  C UCD012F_F03_BF201830Ta12P025C08P012B111F1_021.ab1   130 
  729  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   119 
  733  C UCD012F_F03_BF201830Ta12P025C08P012B111F1_021.ab1   122 
  741  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1   107 
  798  C UCD012F_F03_BF201830Ta12P025C08P012B111F1_021.ab1    55 
  802  C UCD021F_F09_BF201830Ta12P025C08P012B111F2_069.ab1    46 
  844  C UCD012F_F03_BF201830Ta12P025C08P012B111F1_021.ab1     8 
Contig length: old 863, new 851

Contig length: old 851, new 851
New start: 0