No. words: 1034; after pruning: 995


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.4 (1,1:-27)  156  0.00 0.00 0.00  UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1        1   157 (59)    UCD021R_A10_BF201830Ta15P025C08P012B111R2_080.ab1       28   184 (0) *
Merge:(0)    1    0.0 0.0 (2,1:775)   53  4.11 1.37 1.37  UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1      144   216 (0)  C UCD021F_A10_BF201830Ta15P025C08P012B111F2_080.ab1   (0)   634   562 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  102 nodes

 54 str. conn. components

Path
    1    UCD021R_A10_BF201830Ta15P025C08P012B111R2_080.ab1     1 
   31    UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1     4 
   35    UCD021R_A10_BF201830Ta15P025C08P012B111R2_080.ab1    35 
   47    UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1    20 
   51    UCD021R_A10_BF201830Ta15P025C08P012B111R2_080.ab1    51 
   55    UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1    28 
   59    UCD021R_A10_BF201830Ta15P025C08P012B111R2_080.ab1    59 
   63    UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1    36 
   75    UCD021R_A10_BF201830Ta15P025C08P012B111R2_080.ab1    75 
   83    UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1    56 
   95    UCD021R_A10_BF201830Ta15P025C08P012B111R2_080.ab1    95 
   99    UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1    72 
  135    UCD021R_A10_BF201830Ta15P025C08P012B111R2_080.ab1   135 
  139    UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1   112 
  196  C UCD021F_A10_BF201830Ta15P025C08P012B111F2_080.ab1   608 
  200    UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1   173 
  221  C UCD021F_A10_BF201830Ta15P025C08P012B111F2_080.ab1   584 
  225    UCD012R_A04_BF201830Ta15P025C08P012B111R1_032.ab1   198 
  235  C UCD021F_A10_BF201830Ta15P025C08P012B111F2_080.ab1   570 
Contig length: old 803, new 804

Contig length: old 804, new 804
New start: 0 
S Change at: 205; seg lengths: entry 4, contig 4