No. words: 1636; after pruning: 1597


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:-1)  430  1.12 0.00 0.00  UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1        1   447 (1)    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1        2   448 (0) *
Merge:(0)    0    0.0 7.4 (2,1:836)  339  0.85 0.00 0.00  UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1       98   448 (0)  C UCD021F_B10_BF201830Ta16P025C08P012B111F2_078.ab1   (0)   740   390 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  534 nodes

 200 str. conn. components

Path
    1    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1     1 
   21    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1    20 
   25    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1    25 
   29    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1    28 
   33    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1    33 
   45    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1    44 
   53    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1    53 
   61    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1    60 
   73    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1    73 
  105    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   104 
  109    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   109 
  159    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   158 
  163    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   163 
  187    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   186 
  195    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   195 
  201    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   200 
  203    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   203 
  209    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   208 
  213    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   213 
  277    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   276 
  279    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   279 
  291    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   290 
  301    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   301 
  323  C UCD021F_B10_BF201830Ta16P025C08P012B111F2_078.ab1   516 
  327    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   327 
  331  C UCD021F_B10_BF201830Ta16P025C08P012B111F2_078.ab1   508 
  339    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   339 
  343    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   342 
  347    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   347 
  353    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   352 
  355  C UCD021F_B10_BF201830Ta16P025C08P012B111F2_078.ab1   484 
  371    UCD012R_B04_BF201830Ta16P025C08P012B111R1_030.ab1   370 
  375  C UCD021F_B10_BF201830Ta16P025C08P012B111F2_078.ab1   464 
  399    UCD021R_B10_BF201830Ta16P025C08P012B111R2_078.ab1   399 
  403  C UCD021F_B10_BF201830Ta16P025C08P012B111F2_078.ab1   436 
Contig length: old 838, new 838

Contig length: old 838, new 838
New start: 0