No. words: 1502; after pruning: 1463


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:845)  528  0.19 0.00 0.00  UCD021F_D10_BF201830Ta18P025C08P012B111F2_074.ab1      217   750 (0)  C UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1   (0)   630    97 *
Merge:(0)    0    0.0 2.7 (2,1:843)  122  0.00 0.00 0.00  UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1        3   124 (506)    UCD012R_D04_BF201830Ta18P025C08P012B111R1_026.ab1        1   122 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  338 nodes

 172 str. conn. components

Path
    1    UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1     1 
    6    UCD012R_D04_BF201830Ta18P025C08P012B111R1_026.ab1     4 
   18    UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1    18 
   42    UCD012R_D04_BF201830Ta18P025C08P012B111R1_026.ab1    40 
   46    UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1    46 
   74    UCD012R_D04_BF201830Ta18P025C08P012B111R1_026.ab1    72 
   78    UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1    78 
  447  C UCD021F_D10_BF201830Ta18P025C08P012B111F2_074.ab1   400 
  451    UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1   451 
  459  C UCD021F_D10_BF201830Ta18P025C08P012B111F2_074.ab1   388 
  463    UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1   463 
  467  C UCD021F_D10_BF201830Ta18P025C08P012B111F2_074.ab1   380 
  479    UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1   479 
  483  C UCD021F_D10_BF201830Ta18P025C08P012B111F2_074.ab1   364 
  519    UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1   519 
  523  C UCD021F_D10_BF201830Ta18P025C08P012B111F2_074.ab1   324 
  531    UCD021R_D10_BF201830Ta18P025C08P012B111R2_074.ab1   531 
  539  C UCD021F_D10_BF201830Ta18P025C08P012B111F2_074.ab1   308 
Contig length: old 846, new 846

Contig length: old 846, new 846
New start: 0