No. words: 1390; after pruning: 1364


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.7 (1,1:686)  608  2.71 0.00 0.00  UCD027F_A11_BF201830Ta19P025H07P036D021F1_095.ab1        1   665 (0)  C UCD027R_A11_BF201830Ta19P025H07P036D021R1_095.ab1   (38)   687    23 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C UCD027R_A11_BF201830Ta19P025H07P036D021R1_095.ab1   725 
   46    UCD027F_A11_BF201830Ta19P025H07P036D021F1_095.ab1     8 
  101  C UCD027R_A11_BF201830Ta19P025H07P036D021R1_095.ab1   625 
  113    UCD027F_A11_BF201830Ta19P025H07P036D021F1_095.ab1    75 
  125  C UCD027R_A11_BF201830Ta19P025H07P036D021R1_095.ab1   601 
  129    UCD027F_A11_BF201830Ta19P025H07P036D021F1_095.ab1    91 
  137  C UCD027R_A11_BF201830Ta19P025H07P036D021R1_095.ab1   589 
Contig length: old 725, new 725

Contig length: old 725, new 725
New start: 0 
S Change at: 94; seg lengths: entry 4, contig 4