No. words: 1361; after pruning: 1335


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.3 (1,1:702)  583  3.35 0.15 0.00  UCD027F_B11_BF201830Ta20P025H07P036D021F1_093.ab1       18   674 (0)  C UCD027R_B11_BF201830Ta20P025H07P036D021R1_093.ab1   (0)   687    30 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    UCD027F_B11_BF201830Ta20P025H07P036D021F1_093.ab1     1 
   25  C UCD027R_B11_BF201830Ta20P025H07P036D021R1_093.ab1   680 
   29    UCD027F_B11_BF201830Ta20P025H07P036D021F1_093.ab1    29 
   84  C UCD027R_B11_BF201830Ta20P025H07P036D021R1_093.ab1   620 
   92    UCD027F_B11_BF201830Ta20P025H07P036D021F1_093.ab1    92 
   96  C UCD027R_B11_BF201830Ta20P025H07P036D021R1_093.ab1   608 
  153    UCD027F_B11_BF201830Ta20P025H07P036D021F1_093.ab1   153 
  157  C UCD027R_B11_BF201830Ta20P025H07P036D021R1_093.ab1   547 
Contig length: old 703, new 703

Contig length: old 703, new 704
New start: 0 
S Change at: 52; seg lengths: entry 1, contig 1
S Change at: 57; seg lengths: entry 4, contig 4
I Change at: 71; seg lengths: entry 1, contig 0