No. words: 1317; after pruning: 1291


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.3 (1,1:715)  535  3.49 0.00 0.00  UCD027F_C11_BF201830Ta21P025H07P036D021F1_091.ab1       24   624 (0)  C UCD027R_C11_BF201830Ta21P025H07P036D021R1_091.ab1   (0)   693    93 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1    UCD027F_C11_BF201830Ta21P025H07P036D021F1_091.ab1     1 
   36  C UCD027R_C11_BF201830Ta21P025H07P036D021R1_091.ab1   681 
   44    UCD027F_C11_BF201830Ta21P025H07P036D021F1_091.ab1    44 
   52  C UCD027R_C11_BF201830Ta21P025H07P036D021R1_091.ab1   665 
   90    UCD027F_C11_BF201830Ta21P025H07P036D021F1_091.ab1    90 
   94  C UCD027R_C11_BF201830Ta21P025H07P036D021R1_091.ab1   623 
  102    UCD027F_C11_BF201830Ta21P025H07P036D021F1_091.ab1   102 
  106  C UCD027R_C11_BF201830Ta21P025H07P036D021R1_091.ab1   611 
  162    UCD027F_C11_BF201830Ta21P025H07P036D021F1_091.ab1   162 
  166  C UCD027R_C11_BF201830Ta21P025H07P036D021R1_091.ab1   551 
Contig length: old 716, new 716

Contig length: old 716, new 716
New start: 0 
S Change at: 66; seg lengths: entry 1, contig 1