No. words: 2227; after pruning: 2175


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:840)  696  0.00 0.00 0.00  UCD012R_A05_BF201830Ta23P025C08P012B111R1_047.ab1        7   705 (0)  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   (0)   835   137 *
Merge:(0)    1    0.0 7.4 (2,1:-10)  334  0.29 0.00 0.00  UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1      497   835 (0)  C UCD021R_A11_BF201830Ta23P025C08P012B111R2_095.ab1   (0)   355    17 *
Merge:(0)    0    0.0 7.2 (3,1:843)  325  0.30 0.00 0.00  UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1        1   329 (506)    UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1        4   332 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 1       1        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  936 nodes

 382 str. conn. components

Path
    1    UCD021R_A11_BF201830Ta23P025C08P012B111R2_095.ab1     1 
   19    UCD012R_A05_BF201830Ta23P025C08P012B111R1_047.ab1     9 
  460  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   392 
  480    UCD012R_A05_BF201830Ta23P025C08P012B111R1_047.ab1   470 
  484  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   368 
  504    UCD012R_A05_BF201830Ta23P025C08P012B111R1_047.ab1   494 
  512  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   340 
  516    UCD012R_A05_BF201830Ta23P025C08P012B111R1_047.ab1   506 
  524  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   328 
  528    UCD012R_A05_BF201830Ta23P025C08P012B111R1_047.ab1   518 
  540  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   312 
  552    UCD012R_A05_BF201830Ta23P025C08P012B111R1_047.ab1   542 
  568  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   284 
  572    UCD012R_A05_BF201830Ta23P025C08P012B111R1_047.ab1   562 
  600  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   252 
  648  C UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1   207 
  652  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   200 
  660    UCD012R_A05_BF201830Ta23P025C08P012B111R1_047.ab1   650 
  664  C UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1   191 
  672  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   180 
  716  C UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1   139 
  724  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   128 
  736  C UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1   119 
  748  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1   104 
  752  C UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1   103 
  780  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1    72 
  788  C UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1    67 
  792  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1    60 
  800  C UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1    55 
  832  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1    20 
  836  C UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1    19 
  840  C UCD021F_A11_BF201830Ta23P025C08P012B111F2_095.ab1    12 
  848  C UCD012F_A05_BF201830Ta23P025C08P012B111F1_047.ab1     7 
Contig length: old 854, new 854

Contig length: old 854, new 854
New start: 0