No. words: 1359; after pruning: 1333


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.9 (1,1:711)  589  2.79 0.00 0.00  UCD027F_E11_BF201830Ta23P025H07P036D021F1_087.ab1       28   673 (1)  C UCD027R_E11_BF201830Ta23P025H07P036D021R1_087.ab1   (0)   685    40 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1    UCD027F_E11_BF201830Ta23P025H07P036D021F1_087.ab1     1 
   35  C UCD027R_E11_BF201830Ta23P025H07P036D021R1_087.ab1   678 
   39    UCD027F_E11_BF201830Ta23P025H07P036D021F1_087.ab1    39 
   49  C UCD027R_E11_BF201830Ta23P025H07P036D021R1_087.ab1   664 
   59    UCD027F_E11_BF201830Ta23P025H07P036D021F1_087.ab1    59 
   63  C UCD027R_E11_BF201830Ta23P025H07P036D021R1_087.ab1   650 
   67    UCD027F_E11_BF201830Ta23P025H07P036D021F1_087.ab1    67 
   71  C UCD027R_E11_BF201830Ta23P025H07P036D021R1_087.ab1   642 
   75    UCD027F_E11_BF201830Ta23P025H07P036D021F1_087.ab1    75 
  103  C UCD027R_E11_BF201830Ta23P025H07P036D021R1_087.ab1   610 
  171    UCD027F_E11_BF201830Ta23P025H07P036D021F1_087.ab1   171 
  175  C UCD027R_E11_BF201830Ta23P025H07P036D021R1_087.ab1   538 
Contig length: old 712, new 712

Contig length: old 712, new 712
New start: 0