No. words: 1340; after pruning: 1314


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:729)  596  0.33 0.16 0.00  UCD027F_A09_BF201830Td03P025H07P036D021F1_079.ab1       72   680 (0)  C UCD027R_A09_BF201830Td03P025H07P036D021R1_079.ab1   (0)   660    51 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1    UCD027F_A09_BF201830Td03P025H07P036D021F1_079.ab1     1 
   75  C UCD027R_A09_BF201830Td03P025H07P036D021R1_079.ab1   657 
   79    UCD027F_A09_BF201830Td03P025H07P036D021F1_079.ab1    79 
   87  C UCD027R_A09_BF201830Td03P025H07P036D021R1_079.ab1   645 
   91    UCD027F_A09_BF201830Td03P025H07P036D021F1_079.ab1    91 
  123  C UCD027R_A09_BF201830Td03P025H07P036D021R1_079.ab1   608 
  131    UCD027F_A09_BF201830Td03P025H07P036D021F1_079.ab1   131 
  143  C UCD027R_A09_BF201830Td03P025H07P036D021R1_079.ab1   588 
  155    UCD027F_A09_BF201830Td03P025H07P036D021F1_079.ab1   155 
  163  C UCD027R_A09_BF201830Td03P025H07P036D021R1_079.ab1   568 
  167    UCD027F_A09_BF201830Td03P025H07P036D021F1_079.ab1   167 
  171  C UCD027R_A09_BF201830Td03P025H07P036D021R1_079.ab1   560 
  223    UCD027F_A09_BF201830Td03P025H07P036D021F1_079.ab1   223 
  227  C UCD027R_A09_BF201830Td03P025H07P036D021R1_079.ab1   504 
  255    UCD027F_A09_BF201830Td03P025H07P036D021F1_079.ab1   255 
  259  C UCD027R_A09_BF201830Td03P025H07P036D021R1_079.ab1   472 
Contig length: old 730, new 730

Contig length: old 730, new 730
New start: 0