No. words: 1341; after pruning: 1315


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 7.7 (1,1:725)  565  1.97 0.16 0.00  UCD027F_C09_BF201830Td05P025H07P036D021F1_075.ab1       72   679 (0)  C UCD027R_C09_BF201830Td05P025H07P036D021R1_075.ab1   (6)   656    48 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    UCD027F_C09_BF201830Td05P025H07P036D021F1_075.ab1     1 
  120  C UCD027R_C09_BF201830Td05P025H07P036D021R1_075.ab1   607 
  128    UCD027F_C09_BF201830Td05P025H07P036D021F1_075.ab1   128 
  145  C UCD027R_C09_BF201830Td05P025H07P036D021R1_075.ab1   582 
  157    UCD027F_C09_BF201830Td05P025H07P036D021F1_075.ab1   157 
  161  C UCD027R_C09_BF201830Td05P025H07P036D021R1_075.ab1   566 
  165    UCD027F_C09_BF201830Td05P025H07P036D021F1_075.ab1   165 
  173  C UCD027R_C09_BF201830Td05P025H07P036D021R1_075.ab1   554 
  181    UCD027F_C09_BF201830Td05P025H07P036D021F1_075.ab1   181 
  197  C UCD027R_C09_BF201830Td05P025H07P036D021R1_075.ab1   530 
  205    UCD027F_C09_BF201830Td05P025H07P036D021F1_075.ab1   205 
  213  C UCD027R_C09_BF201830Td05P025H07P036D021R1_075.ab1   514 
  221    UCD027F_C09_BF201830Td05P025H07P036D021F1_075.ab1   221 
  261  C UCD027R_C09_BF201830Td05P025H07P036D021R1_075.ab1   466 
  269    UCD027F_C09_BF201830Td05P025H07P036D021F1_075.ab1   269 
  281  C UCD027R_C09_BF201830Td05P025H07P036D021R1_075.ab1   446 
Contig length: old 726, new 726

Contig length: old 726, new 726
New start: 0