No. words: 1169; after pruning: 1143


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 2.5 (1,1:648)  471  2.71 0.00 0.00  UCD027F_D09_BF201830Td06P025H07P036D021F1_073.ab1        4   519 (0)  C UCD027R_D09_BF201830Td06P025H07P036D021R1_073.ab1   (4)   646   131 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C UCD027R_D09_BF201830Td06P025H07P036D021R1_073.ab1   650 
   12    UCD027F_D09_BF201830Td06P025H07P036D021F1_073.ab1    11 
   32  C UCD027R_D09_BF201830Td06P025H07P036D021R1_073.ab1   619 
   36    UCD027F_D09_BF201830Td06P025H07P036D021F1_073.ab1    35 
   44  C UCD027R_D09_BF201830Td06P025H07P036D021R1_073.ab1   607 
   48    UCD027F_D09_BF201830Td06P025H07P036D021F1_073.ab1    47 
   56  C UCD027R_D09_BF201830Td06P025H07P036D021R1_073.ab1   595 
   60    UCD027F_D09_BF201830Td06P025H07P036D021F1_073.ab1    59 
   72  C UCD027R_D09_BF201830Td06P025H07P036D021R1_073.ab1   579 
  162    UCD027F_D09_BF201830Td06P025H07P036D021F1_073.ab1   161 
  166  C UCD027R_D09_BF201830Td06P025H07P036D021R1_073.ab1   485 
  186    UCD027F_D09_BF201830Td06P025H07P036D021F1_073.ab1   185 
  194  C UCD027R_D09_BF201830Td06P025H07P036D021R1_073.ab1   457 
  206    UCD027F_D09_BF201830Td06P025H07P036D021F1_073.ab1   205 
  210  C UCD027R_D09_BF201830Td06P025H07P036D021R1_073.ab1   441 
Contig length: old 650, new 650

Contig length: old 650, new 650
New start: 0