No. words: 1322; after pruning: 1296


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.1 (1,1:673)  574  1.65 0.00 0.00  UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1       68   674 (38)  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   (3)   607     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1     1 
   76  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   599 
   84    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1    84 
  124  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   551 
  132    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   132 
  140  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   535 
  148    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   148 
  158  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   517 
  162    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   162 
  174  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   501 
  206    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   206 
  210  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   465 
  222    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   222 
  226  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   449 
  230    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   230 
  242  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   433 
  246    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   246 
  266  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   409 
  310    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   310 
  314  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   361 
  338    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   338 
  342  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   333 
  435    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   435 
  443  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   232 
  506    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   506 
  514  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   161 
  556    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   556 
  560  C UCD027R_F09_BF201830Td08P025H07P036D021R1_069.ab1   115 
  671    UCD027F_F09_BF201830Td08P025H07P036D021F1_069.ab1   671 
Contig length: old 712, new 712

Contig length: old 712, new 712
New start: 0 
S Change at: 72; seg lengths: entry 1, contig 1