No. words: 1063; after pruning: 1037


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.3 (1,1:650)  383  1.95 0.00 0.00  UCD027F_G09_BF201830Td09P025H07P036D021F1_067.ab1      110   519 (2)  C UCD027R_G09_BF201830Td09P025H07P036D021R1_067.ab1   (0)   542   133 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1    UCD027F_G09_BF201830Td09P025H07P036D021F1_067.ab1     1 
  128  C UCD027R_G09_BF201830Td09P025H07P036D021R1_067.ab1   524 
  139    UCD027F_G09_BF201830Td09P025H07P036D021F1_067.ab1   139 
  143  C UCD027R_G09_BF201830Td09P025H07P036D021R1_067.ab1   509 
  155    UCD027F_G09_BF201830Td09P025H07P036D021F1_067.ab1   155 
  175  C UCD027R_G09_BF201830Td09P025H07P036D021R1_067.ab1   477 
  179    UCD027F_G09_BF201830Td09P025H07P036D021F1_067.ab1   179 
  195  C UCD027R_G09_BF201830Td09P025H07P036D021R1_067.ab1   457 
  203    UCD027F_G09_BF201830Td09P025H07P036D021F1_067.ab1   203 
  215  C UCD027R_G09_BF201830Td09P025H07P036D021R1_067.ab1   437 
  223    UCD027F_G09_BF201830Td09P025H07P036D021F1_067.ab1   223 
  227  C UCD027R_G09_BF201830Td09P025H07P036D021R1_067.ab1   425 
  263    UCD027F_G09_BF201830Td09P025H07P036D021F1_067.ab1   263 
  267  C UCD027R_G09_BF201830Td09P025H07P036D021R1_067.ab1   385 
Contig length: old 651, new 651

Contig length: old 651, new 651
New start: 0