No. words: 1373; after pruning: 1347


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.0 (1,1:705)  593  3.32 0.00 0.00  UCD027F_H09_BF201830Td10P025H07P036D021F1_065.ab1       24   685 (1)  C UCD027R_H09_BF201830Td10P025H07P036D021R1_065.ab1   (4)   683    22 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    UCD027F_H09_BF201830Td10P025H07P036D021F1_065.ab1     1 
   40  C UCD027R_H09_BF201830Td10P025H07P036D021R1_065.ab1   667 
   89    UCD027F_H09_BF201830Td10P025H07P036D021F1_065.ab1    89 
   93  C UCD027R_H09_BF201830Td10P025H07P036D021R1_065.ab1   614 
   97    UCD027F_H09_BF201830Td10P025H07P036D021F1_065.ab1    97 
  109  C UCD027R_H09_BF201830Td10P025H07P036D021R1_065.ab1   598 
  129    UCD027F_H09_BF201830Td10P025H07P036D021F1_065.ab1   129 
  140  C UCD027R_H09_BF201830Td10P025H07P036D021R1_065.ab1   567 
  148    UCD027F_H09_BF201830Td10P025H07P036D021F1_065.ab1   148 
  152  C UCD027R_H09_BF201830Td10P025H07P036D021R1_065.ab1   555 
  643    UCD027F_H09_BF201830Td10P025H07P036D021F1_065.ab1   643 
  652  C UCD027R_H09_BF201830Td10P025H07P036D021R1_065.ab1    55 
Contig length: old 706, new 706

Contig length: old 706, new 706
New start: 0