No. words: 1051; after pruning: 1025


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 4.3 (1,1:476)  453  0.00 0.21 0.21  UCD019F_E03_BF202975AS01P028H04H101F1_023.ab1        5   470 (61)  C UCD019R_E03_BF202975AS01P028H04H101R1_023.ab1   (47)   473     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD019R_E03_BF202975AS01P028H04H101R1_023.ab1   520 
   59    UCD019F_E03_BF202975AS01P028H04H101F1_023.ab1    15 
   67  C UCD019R_E03_BF202975AS01P028H04H101R1_023.ab1   454 
   75    UCD019F_E03_BF202975AS01P028H04H101F1_023.ab1    31 
  107  C UCD019R_E03_BF202975AS01P028H04H101R1_023.ab1   414 
  111    UCD019F_E03_BF202975AS01P028H04H101F1_023.ab1    67 
  135  C UCD019R_E03_BF202975AS01P028H04H101R1_023.ab1   386 
  139    UCD019F_E03_BF202975AS01P028H04H101F1_023.ab1    95 
  155  C UCD019R_E03_BF202975AS01P028H04H101R1_023.ab1   366 
  163    UCD019F_E03_BF202975AS01P028H04H101F1_023.ab1   119 
  339  C UCD019R_E03_BF202975AS01P028H04H101R1_023.ab1   182 
  347    UCD019F_E03_BF202975AS01P028H04H101F1_023.ab1   303 
Contig length: old 574, new 575

Contig length: old 575, new 575
New start: 0