No. words: 1049; after pruning: 1023


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:474)  455  0.00 0.63 0.21  UCD019F_G03_BF202975AT01P028H04H101F1_019.ab1        1   475 (60)  C UCD019R_G03_BF202975AT01P028H04H101R1_019.ab1   (37)   477     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD019R_G03_BF202975AT01P028H04H101R1_019.ab1   514 
   62    UCD019F_G03_BF202975AT01P028H04H101F1_019.ab1    22 
  138  C UCD019R_G03_BF202975AT01P028H04H101R1_019.ab1   377 
  142    UCD019F_G03_BF202975AT01P028H04H101F1_019.ab1   102 
  226  C UCD019R_G03_BF202975AT01P028H04H101R1_019.ab1   289 
  230    UCD019F_G03_BF202975AT01P028H04H101F1_019.ab1   190 
  250  C UCD019R_G03_BF202975AT01P028H04H101R1_019.ab1   265 
  254    UCD019F_G03_BF202975AT01P028H04H101F1_019.ab1   214 
  262  C UCD019R_G03_BF202975AT01P028H04H101R1_019.ab1   253 
  346    UCD019F_G03_BF202975AT01P028H04H101F1_019.ab1   306 
Contig length: old 574, new 575

Contig length: old 575, new 575
New start: 0