No. words: 1015; after pruning: 989


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 9.2 (1,1:471)  451  0.43 0.00 0.00  UCD019F_H03_BF202975AT02P028H04H101F1_017.ab1       12   472 (60)  C UCD019R_H03_BF202975AT02P028H04H101R1_017.ab1   (22)   461     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C UCD019R_H03_BF202975AT02P028H04H101R1_017.ab1   483 
   26    UCD019F_H03_BF202975AT02P028H04H101F1_017.ab1    15 
  192  C UCD019R_H03_BF202975AT02P028H04H101R1_017.ab1   292 
  196    UCD019F_H03_BF202975AT02P028H04H101F1_017.ab1   185 
  228  C UCD019R_H03_BF202975AT02P028H04H101R1_017.ab1   256 
  232    UCD019F_H03_BF202975AT02P028H04H101F1_017.ab1   221 
  240  C UCD019R_H03_BF202975AT02P028H04H101R1_017.ab1   244 
  328    UCD019F_H03_BF202975AT02P028H04H101F1_017.ab1   317 
  332  C UCD019R_H03_BF202975AT02P028H04H101R1_017.ab1   152 
  336    UCD019F_H03_BF202975AT02P028H04H101F1_017.ab1   325 
  340  C UCD019R_H03_BF202975AT02P028H04H101R1_017.ab1   144 
  440    UCD019F_H03_BF202975AT02P028H04H101F1_017.ab1   429 
  444  C UCD019R_H03_BF202975AT02P028H04H101R1_017.ab1    40 
  456    UCD019F_H03_BF202975AT02P028H04H101F1_017.ab1   445 
  460  C UCD019R_H03_BF202975AT02P028H04H101R1_017.ab1    24 
  480    UCD019F_H03_BF202975AT02P028H04H101F1_017.ab1   469 
Contig length: old 543, new 543

Contig length: old 543, new 543
New start: 0