No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:508)  497  0.00 0.39 0.00  UCD019F_A04_BF202975LD01P028H04H101F1_032.ab1        1   508 (139)  C UCD019R_A04_BF202975LD01P028H04H101R1_032.ab1   (72)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCD019R_A04_BF202975LD01P028H04H101R1_032.ab1   582 
  114    UCD019F_A04_BF202975LD01P028H04H101F1_032.ab1    41 
  146  C UCD019R_A04_BF202975LD01P028H04H101R1_032.ab1   437 
  155    UCD019F_A04_BF202975LD01P028H04H101F1_032.ab1    81 
  175  C UCD019R_A04_BF202975LD01P028H04H101R1_032.ab1   408 
  183    UCD019F_A04_BF202975LD01P028H04H101F1_032.ab1   109 
Contig length: old 720, new 721

Contig length: old 721, new 721
New start: 0