No. words: 1099; after pruning: 1073


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:505)  490  0.20 0.40 0.00  UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1        1   505 (76)  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1   (11)   507     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1   518 
   23    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1    11 
   83  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1   436 
   92    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1    79 
  116  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1   403 
  120    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1   107 
  232  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1   287 
  252    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1   239 
  260  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1   259 
  296    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1   283 
  300  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1   219 
  324    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1   311 
  356  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1   163 
  364    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1   351 
  376  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1   143 
  416    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1   403 
  420  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1    99 
  424    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1   411 
  436  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1    83 
  440    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1   427 
  491  C UCD019R_B04_BF202975LD02P028H04H101R1_030.ab1    28 
  495    UCD019F_B04_BF202975LD02P028H04H101F1_030.ab1   482 
Contig length: old 593, new 594

Contig length: old 594, new 594
New start: 0