No. words: 1240; after pruning: 1214


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 9.9 (1,1:515)  501  0.39 0.19 0.00  UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1        1   514 (163)  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1   (46)   517     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1   563 
   71    UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1    24 
   75  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1   489 
  107    UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1    60 
  123  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1   441 
  127    UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1    80 
  155  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1   409 
  159    UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1   112 
  259  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1   305 
  263    UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1   216 
  279  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1   285 
  379    UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1   332 
  387  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1   177 
  403    UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1   356 
  411  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1   153 
  455    UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1   408 
  491  C UCD019R_D04_BF202975LD04P028H04H101R1_026.ab1    73 
  499    UCD019F_D04_BF202975LD04P028H04H101F1_026.ab1   452 
Contig length: old 724, new 724

Contig length: old 724, new 724
New start: 0