No. words: 1317; after pruning: 1291


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.0 (1,1:513)  501  0.00 0.00 0.20  UCD019F_E04_BF202975LD05P028H04H101F1_024.ab1        1   510 (146)  C UCD019R_E04_BF202975LD05P028H04H101R1_024.ab1   (148)   513     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C UCD019R_E04_BF202975LD05P028H04H101R1_024.ab1   661 
  188    UCD019F_E04_BF202975LD05P028H04H101F1_024.ab1    40 
  192  C UCD019R_E04_BF202975LD05P028H04H101R1_024.ab1   470 
  204    UCD019F_E04_BF202975LD05P028H04H101F1_024.ab1    56 
  216  C UCD019R_E04_BF202975LD05P028H04H101R1_024.ab1   446 
  224    UCD019F_E04_BF202975LD05P028H04H101F1_024.ab1    76 
  248  C UCD019R_E04_BF202975LD05P028H04H101R1_024.ab1   414 
  268    UCD019F_E04_BF202975LD05P028H04H101F1_024.ab1   120 
  272  C UCD019R_E04_BF202975LD05P028H04H101R1_024.ab1   390 
  308    UCD019F_E04_BF202975LD05P028H04H101F1_024.ab1   160 
  324  C UCD019R_E04_BF202975LD05P028H04H101R1_024.ab1   338 
  332    UCD019F_E04_BF202975LD05P028H04H101F1_024.ab1   184 
  360  C UCD019R_E04_BF202975LD05P028H04H101R1_024.ab1   302 
  364    UCD019F_E04_BF202975LD05P028H04H101F1_024.ab1   216 
  452  C UCD019R_E04_BF202975LD05P028H04H101R1_024.ab1   210 
  460    UCD019F_E04_BF202975LD05P028H04H101F1_024.ab1   312 
Contig length: old 803, new 804

Contig length: old 804, new 804
New start: 0