No. words: 1312; after pruning: 1286


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:497)  495  0.00 0.00 0.00  UCD019F_A05_BF202975LD09P028H04H101F1_047.ab1        1   498 (177)  C UCD019R_A05_BF202975LD09P028H04H101R1_047.ab1   (139)   498     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCD019R_A05_BF202975LD09P028H04H101R1_047.ab1   637 
  175    UCD019F_A05_BF202975LD09P028H04H101F1_047.ab1    36 
  183  C UCD019R_A05_BF202975LD09P028H04H101R1_047.ab1   455 
  191    UCD019F_A05_BF202975LD09P028H04H101F1_047.ab1    52 
  211  C UCD019R_A05_BF202975LD09P028H04H101R1_047.ab1   427 
  247    UCD019F_A05_BF202975LD09P028H04H101F1_047.ab1   108 
  263  C UCD019R_A05_BF202975LD09P028H04H101R1_047.ab1   375 
  267    UCD019F_A05_BF202975LD09P028H04H101F1_047.ab1   128 
  363  C UCD019R_A05_BF202975LD09P028H04H101R1_047.ab1   275 
  431    UCD019F_A05_BF202975LD09P028H04H101F1_047.ab1   292 
  439  C UCD019R_A05_BF202975LD09P028H04H101R1_047.ab1   199 
  467    UCD019F_A05_BF202975LD09P028H04H101F1_047.ab1   328 
  531  C UCD019R_A05_BF202975LD09P028H04H101R1_047.ab1   107 
  539    UCD019F_A05_BF202975LD09P028H04H101F1_047.ab1   400 
Contig length: old 814, new 814

Contig length: old 814, new 814
New start: 0