No. words: 1325; after pruning: 1299


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.3 (1,1:510)  493  0.00 0.39 0.20  UCD019F_B05_BF202975LD10P028H04H101F1_045.ab1        1   509 (166)  C UCD019R_B05_BF202975LD10P028H04H101R1_045.ab1   (138)   512     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C UCD019R_B05_BF202975LD10P028H04H101R1_045.ab1   650 
  195    UCD019F_B05_BF202975LD10P028H04H101F1_045.ab1    56 
  211  C UCD019R_B05_BF202975LD10P028H04H101R1_045.ab1   440 
  220    UCD019F_B05_BF202975LD10P028H04H101F1_045.ab1    80 
  240  C UCD019R_B05_BF202975LD10P028H04H101R1_045.ab1   411 
  264    UCD019F_B05_BF202975LD10P028H04H101F1_045.ab1   124 
  340  C UCD019R_B05_BF202975LD10P028H04H101R1_045.ab1   311 
  460    UCD019F_B05_BF202975LD10P028H04H101F1_045.ab1   320 
  472  C UCD019R_B05_BF202975LD10P028H04H101R1_045.ab1   179 
  476    UCD019F_B05_BF202975LD10P028H04H101F1_045.ab1   336 
  552  C UCD019R_B05_BF202975LD10P028H04H101R1_045.ab1    99 
  560    UCD019F_B05_BF202975LD10P028H04H101F1_045.ab1   420 
Contig length: old 814, new 815

Contig length: old 815, new 815
New start: 0