No. words: 1160; after pruning: 1134


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:497)  492  0.20 0.00 0.00  UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1        1   498 (82)  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1   (82)   498     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1   580 
  164    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1    82 
  168  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1   413 
  188    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   106 
  204  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1   377 
  212    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   130 
  220  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1   361 
  224    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   142 
  248  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1   333 
  260    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   178 
  280  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1   301 
  424    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   342 
  428  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1   153 
  436    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   354 
  444  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1   137 
  500    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   418 
  504  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1    77 
  524    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   442 
  528  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1    53 
  548    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   466 
  560  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1    21 
  564    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   482 
  572  C UCD019R_C05_BF202975LD11P028H04H101R1_043.ab1     9 
  576    UCD019F_C05_BF202975LD11P028H04H101F1_043.ab1   494 
Contig length: old 662, new 662

Contig length: old 662, new 662
New start: 0