No. words: 1336; after pruning: 1310


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 10.2 (1,1:509)  492  0.40 0.00 0.00  UCD019F_D05_BF202975LD12P028H04H101F1_041.ab1        7   508 (134)  C UCD019R_D05_BF202975LD12P028H04H101R1_041.ab1   (190)   504     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C UCD019R_D05_BF202975LD12P028H04H101R1_041.ab1   694 
  222    UCD019F_D05_BF202975LD12P028H04H101F1_041.ab1    38 
  230  C UCD019R_D05_BF202975LD12P028H04H101R1_041.ab1   465 
  242    UCD019F_D05_BF202975LD12P028H04H101F1_041.ab1    58 
  254  C UCD019R_D05_BF202975LD12P028H04H101R1_041.ab1   441 
  262    UCD019F_D05_BF202975LD12P028H04H101F1_041.ab1    78 
  270  C UCD019R_D05_BF202975LD12P028H04H101R1_041.ab1   425 
  278    UCD019F_D05_BF202975LD12P028H04H101F1_041.ab1    94 
Contig length: old 826, new 826

Contig length: old 826, new 826
New start: 0