No. words: 1007; after pruning: 981


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:369)  351  0.00 0.27 0.00  UCD017F_G10_BF291674LD04P028D02D081F1_068.ab1        1   370 (145)  C UCD017R_G10_BF291674LD04P028D02D081R1_068.ab1   (121)   371     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C UCD017R_G10_BF291674LD04P028D02D081R1_068.ab1   492 
  151    UCD017F_G10_BF291674LD04P028D02D081F1_068.ab1    29 
  155  C UCD017R_G10_BF291674LD04P028D02D081R1_068.ab1   338 
  191    UCD017F_G10_BF291674LD04P028D02D081F1_068.ab1    69 
  203  C UCD017R_G10_BF291674LD04P028D02D081R1_068.ab1   290 
  251    UCD017F_G10_BF291674LD04P028D02D081F1_068.ab1   129 
  267  C UCD017R_G10_BF291674LD04P028D02D081R1_068.ab1   226 
  283    UCD017F_G10_BF291674LD04P028D02D081F1_068.ab1   161 
  415  C UCD017R_G10_BF291674LD04P028D02D081R1_068.ab1    78 
  419    UCD017F_G10_BF291674LD04P028D02D081F1_068.ab1   297 
  427  C UCD017R_G10_BF291674LD04P028D02D081R1_068.ab1    66 
  431    UCD017F_G10_BF291674LD04P028D02D081F1_068.ab1   309 
  455  C UCD017R_G10_BF291674LD04P028D02D081R1_068.ab1    38 
  459    UCD017F_G10_BF291674LD04P028D02D081F1_068.ab1   337 
  467  C UCD017R_G10_BF291674LD04P028D02D081R1_068.ab1    26 
  471    UCD017F_G10_BF291674LD04P028D02D081F1_068.ab1   349 
Contig length: old 637, new 637

Contig length: old 637, new 637
New start: 0