No. words: 1048; after pruning: 1022


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:352)  335  0.28 0.00 0.00  UCD017F_F11_BF291674LD11P028D02D081F1_085.ab1        1   353 (186)  C UCD017R_F11_BF291674LD11P028D02D081R1_085.ab1   (156)   353     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1  C UCD017R_F11_BF291674LD11P028D02D081R1_085.ab1   509 
  200    UCD017F_F11_BF291674LD11P028D02D081F1_085.ab1    44 
  204  C UCD017R_F11_BF291674LD11P028D02D081R1_085.ab1   306 
  216    UCD017F_F11_BF291674LD11P028D02D081F1_085.ab1    60 
  220  C UCD017R_F11_BF291674LD11P028D02D081R1_085.ab1   290 
  224    UCD017F_F11_BF291674LD11P028D02D081F1_085.ab1    68 
  240  C UCD017R_F11_BF291674LD11P028D02D081R1_085.ab1   270 
  332    UCD017F_F11_BF291674LD11P028D02D081F1_085.ab1   176 
Contig length: old 695, new 695

Contig length: old 695, new 695
New start: 0