No. words: 1038; after pruning: 1012


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:369)  351  0.00 0.27 0.00  UCD017F_G11_BF291674LD12P028D02D081F1_083.ab1        1   370 (146)  C UCD017R_G11_BF291674LD12P028D02D081R1_083.ab1   (151)   371     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C UCD017R_G11_BF291674LD12P028D02D081R1_083.ab1   522 
  181    UCD017F_G11_BF291674LD12P028D02D081F1_083.ab1    29 
  185  C UCD017R_G11_BF291674LD12P028D02D081R1_083.ab1   338 
  229    UCD017F_G11_BF291674LD12P028D02D081F1_083.ab1    77 
  233  C UCD017R_G11_BF291674LD12P028D02D081R1_083.ab1   290 
  345    UCD017F_G11_BF291674LD12P028D02D081F1_083.ab1   193 
  429  C UCD017R_G11_BF291674LD12P028D02D081R1_083.ab1    94 
  433    UCD017F_G11_BF291674LD12P028D02D081F1_083.ab1   281 
  445  C UCD017R_G11_BF291674LD12P028D02D081R1_083.ab1    78 
  449    UCD017F_G11_BF291674LD12P028D02D081F1_083.ab1   297 
  457  C UCD017R_G11_BF291674LD12P028D02D081R1_083.ab1    66 
  465    UCD017F_G11_BF291674LD12P028D02D081F1_083.ab1   313 
  485  C UCD017R_G11_BF291674LD12P028D02D081R1_083.ab1    38 
  493    UCD017F_G11_BF291674LD12P028D02D081F1_083.ab1   341 
  497  C UCD017R_G11_BF291674LD12P028D02D081R1_083.ab1    26 
  501    UCD017F_G11_BF291674LD12P028D02D081F1_083.ab1   349 
Contig length: old 668, new 668

Contig length: old 668, new 668
New start: 0