No. words: 1012; after pruning: 972


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.4 (1,1:337)  323  0.00 0.00 0.30  UCD007F_B07_BF292123LD07P012G05P012G111F1_061.ab1        1   338 (196)  C UCD007R_B07_BF292123LD07P012G05P012G111R1_061.ab1   (141)   337     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  160 nodes

 82 str. conn. components

Path
    1  C UCD007R_B07_BF292123LD07P012G05P012G111R1_061.ab1   478 
  345    UCD007F_B07_BF292123LD07P012G05P012G111F1_061.ab1   204 
Contig length: old 674, new 675

Contig length: old 675, new 675
New start: 0 
S Change at: 542; seg lengths: entry 1, contig 1