No. words: 1623; after pruning: 1597


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:974)  615  0.15 0.00 0.00  UCD019F_B08_BF428792AT02P028G05G111F1_062.ab1      124   771 (0)  C UCD019R_B08_BF428792AT02P028G05G111R1_062.ab1   (0)   852   205 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1    UCD019F_B08_BF428792AT02P028G05G111F1_062.ab1     1 
  415  C UCD019R_B08_BF428792AT02P028G05G111R1_062.ab1   561 
  423    UCD019F_B08_BF428792AT02P028G05G111F1_062.ab1   423 
  435  C UCD019R_B08_BF428792AT02P028G05G111R1_062.ab1   541 
  463    UCD019F_B08_BF428792AT02P028G05G111F1_062.ab1   463 
  467  C UCD019R_B08_BF428792AT02P028G05G111R1_062.ab1   509 
Contig length: old 975, new 975

Contig length: old 975, new 975
New start: 0