No. words: 1611; after pruning: 1571


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:1020)  557  0.34 0.00 0.00  UCD019F_F08_BF428792LD02P028G05G111F1_054.ab1      196   785 (0)  C UCD019R_F08_BF428792LD02P028G05G111R1_054.ab1   (0)   826   237 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1    UCD019F_F08_BF428792LD02P028G05G111F1_054.ab1     1 
  498  C UCD019R_F08_BF428792LD02P028G05G111R1_054.ab1   524 
  574    UCD019F_F08_BF428792LD02P028G05G111F1_054.ab1   574 
  578  C UCD019R_F08_BF428792LD02P028G05G111R1_054.ab1   444 
Contig length: old 1021, new 1021

Contig length: old 1021, new 1021
New start: 0