No. words: 1790; after pruning: 1764


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:1037)  701  0.00 0.27 0.27  UCD019F_D09_BF428792LD08P028G05G111F1_073.ab1       74   825 (0)  C UCD019R_D09_BF428792LD08P028G05G111R1_073.ab1   (0)   965   214 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1    UCD019F_D09_BF428792LD08P028G05G111F1_073.ab1     1 
  562  C UCD019R_D09_BF428792LD08P028G05G111R1_073.ab1   477 
  570    UCD019F_D09_BF428792LD08P028G05G111F1_073.ab1   570 
  622  C UCD019R_D09_BF428792LD08P028G05G111R1_073.ab1   417 
Contig length: old 1038, new 1038

Contig length: old 1038, new 1038
New start: 0