No. words: 1495; after pruning: 1469


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:995)  475  0.20 0.00 0.00  UCD019F_G07_BF428792TU01P028G05G111F1_051.ab1      225   723 (0)  C UCD019R_G07_BF428792TU01P028G05G111R1_051.ab1   (0)   772   274 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1    UCD019F_G07_BF428792TU01P028G05G111F1_051.ab1     1 
  444  C UCD019R_G07_BF428792TU01P028G05G111R1_051.ab1   553 
  452    UCD019F_G07_BF428792TU01P028G05G111F1_051.ab1   452 
  472  C UCD019R_G07_BF428792TU01P028G05G111R1_051.ab1   525 
  492    UCD019F_G07_BF428792TU01P028G05G111F1_051.ab1   492 
  496  C UCD019R_G07_BF428792TU01P028G05G111R1_051.ab1   501 
  556    UCD019F_G07_BF428792TU01P028G05G111F1_051.ab1   556 
  560  C UCD019R_G07_BF428792TU01P028G05G111R1_051.ab1   437 
Contig length: old 996, new 996

Contig length: old 996, new 996
New start: 0