No. words: 1289; after pruning: 1263


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:1004)  263  0.70 0.00 0.00  UCD019F_H07_BF428792TU02P028G05G111F1_049.ab1      351   634 (0)  C UCD019R_H07_BF428792TU02P028G05G111R1_049.ab1   (0)   655   372 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1    UCD019F_H07_BF428792TU02P028G05G111F1_049.ab1     1 
  519  C UCD019R_H07_BF428792TU02P028G05G111R1_049.ab1   487 
  527    UCD019F_H07_BF428792TU02P028G05G111F1_049.ab1   527 
  535  C UCD019R_H07_BF428792TU02P028G05G111R1_049.ab1   471 
  551    UCD019F_H07_BF428792TU02P028G05G111F1_049.ab1   551 
  555  C UCD019R_H07_BF428792TU02P028G05G111R1_049.ab1   451 
Contig length: old 1005, new 1005

Contig length: old 1005, new 1005
New start: 0