No. words: 1274; after pruning: 1248


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:593)  561  0.00 0.51 0.00  UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1        1   593 (47)  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   (38)   596     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   634 
   69    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1    28 
   73  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   562 
   77    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1    36 
  101  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   534 
  109    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1    68 
  129  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   506 
  137    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1    96 
  145  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   490 
  153    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1   112 
  157  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   478 
  161    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1   120 
  397  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   238 
  425    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1   384 
  441  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   194 
  461    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1   420 
  469  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   166 
  481    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1   440 
  485  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1   150 
  525    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1   484 
  537  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1    98 
  593    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1   552 
  625  C UCD005R_D05_BF473744AS01P012E05E111R1_041.ab1    10 
  629    UCD005F_D05_BF473744AS01P012E05E111F1_041.ab1   588 
Contig length: old 680, new 681

Contig length: old 681, new 681
New start: 0