No. words: 1285; after pruning: 1259


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.9 (1,1:605)  572  0.00 0.50 0.00  UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1        1   604 (37)  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1   (36)   608     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1   644 
   68    UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1    29 
   72  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1   573 
   84    UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1    45 
  100  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1   545 
  116    UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1    77 
  124  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1   521 
  136    UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1    97 
  144  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1   501 
  160    UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1   121 
  396  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1   249 
  460    UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1   421 
  468  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1   177 
  524    UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1   485 
  532  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1   113 
  592    UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1   553 
  620  C UCD005R_F05_BF473744AT01P012E05E111R1_037.ab1    25 
  632    UCD005F_F05_BF473744AT01P012E05E111F1_037.ab1   593 
Contig length: old 679, new 680

Contig length: old 680, new 680
New start: 0