No. words: 1508; after pruning: 1482


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:599)  566  0.17 0.50 0.00  UCD005F_A06_BF473744LD02P012E05E111F1_048.ab1        1   599 (195)  C UCD005R_A06_BF473744LD02P012E05E111R1_048.ab1   (112)   602     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C UCD005R_A06_BF473744LD02P012E05E111R1_048.ab1   714 
  272    UCD005F_A06_BF473744LD02P012E05E111F1_048.ab1   157 
Contig length: old 908, new 909

Contig length: old 909, new 909
New start: 0