No. words: 1498; after pruning: 1472


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.8 (1,1:611)  582  0.00 0.33 0.00  UCD005F_D06_BF473744LD05P012E05E111F1_042.ab1        1   609 (88)  C UCD005R_D06_BF473744LD05P012E05E111R1_042.ab1   (188)   613     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C UCD005R_D06_BF473744LD05P012E05E111R1_042.ab1   801 
  219    UCD005F_D06_BF473744LD05P012E05E111F1_042.ab1    29 
  223  C UCD005R_D06_BF473744LD05P012E05E111R1_042.ab1   579 
  259    UCD005F_D06_BF473744LD05P012E05E111F1_042.ab1    69 
  275  C UCD005R_D06_BF473744LD05P012E05E111R1_042.ab1   527 
  283    UCD005F_D06_BF473744LD05P012E05E111F1_042.ab1    93 
  295  C UCD005R_D06_BF473744LD05P012E05E111R1_042.ab1   507 
  303    UCD005F_D06_BF473744LD05P012E05E111F1_042.ab1   113 
  431  C UCD005R_D06_BF473744LD05P012E05E111R1_042.ab1   371 
  679    UCD005F_D06_BF473744LD05P012E05E111F1_042.ab1   489 
  683  C UCD005R_D06_BF473744LD05P012E05E111R1_042.ab1   119 
  791    UCD005F_D06_BF473744LD05P012E05E111F1_042.ab1   601 
Contig length: old 886, new 887

Contig length: old 887, new 887
New start: 0