No. words: 931; after pruning: 905


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.6 (1,1:415)  390  0.00 0.00 0.24  UCD028F_D03_BF473744Sn24P025D09P036H021F1_025.ab1        3   414 (51)  C UCD028R_D03_BF473744Sn24P025D09P036H021R1_025.ab1   (53)   413     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C UCD028R_D03_BF473744Sn24P025D09P036H021R1_025.ab1   466 
   89    UCD028F_D03_BF473744Sn24P025D09P036H021F1_025.ab1    38 
   97  C UCD028R_D03_BF473744Sn24P025D09P036H021R1_025.ab1   370 
  177    UCD028F_D03_BF473744Sn24P025D09P036H021F1_025.ab1   126 
  197  C UCD028R_D03_BF473744Sn24P025D09P036H021R1_025.ab1   270 
  301    UCD028F_D03_BF473744Sn24P025D09P036H021F1_025.ab1   250 
  349  C UCD028R_D03_BF473744Sn24P025D09P036H021R1_025.ab1   118 
  397    UCD028F_D03_BF473744Sn24P025D09P036H021F1_025.ab1   346 
  401  C UCD028R_D03_BF473744Sn24P025D09P036H021R1_025.ab1    66 
  417    UCD028F_D03_BF473744Sn24P025D09P036H021F1_025.ab1   366 
  425  C UCD028R_D03_BF473744Sn24P025D09P036H021R1_025.ab1    42 
  429    UCD028F_D03_BF473744Sn24P025D09P036H021F1_025.ab1   378 
Contig length: old 515, new 516

Contig length: old 516, new 516
New start: 0